added calcs to tree.shared. working on remove.rare command

[mothur.git] / classifyseqscommand.cpp

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index 9030948074003f663978ab10ff0128adc0ad7c37..0a1ef8823e35f687529c70de5ef29e7d33eb91fe 100644 (file)
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -461,7 +461,7 @@ int ClassifySeqsCommand::execute(){
                        for (int i = 0; i < lines.size(); i++) {  delete lines[i];  }  lines.clear();
                        
 #ifdef USE_MPI 
-                               int pid, end, numSeqsPerProcessor; 
+                               int pid, numSeqsPerProcessor; 
                                int tag = 2001;
                                vector<unsigned long int> MPIPos;
                                
@@ -652,7 +652,7 @@ int ClassifySeqsCommand::execute(){
                        
                        //get maxLevel from phylotree so you know how many 'unclassified's to add
                        int maxLevel = taxaSum.getMaxLevel();
-                       
+                                                       
                        //read taxfile - this reading and rewriting is done to preserve the confidence scores.
                        string name, taxon;
                        while (!inTax.eof()) {