#include "mothur.h"
#include "database.hpp"
-#include "doTaxonomy.h"
+#include "phylotree.h"
class Sequence;
string taxFile, templateFile, simpleTax;
vector<string> names;
- //map<string, int> taxConfidenceScore;
void readTaxonomy(string);
vector<string> parseTax(string);
+ MothurOut* m;
};
/**************************************************************************************************/