modified mpi code to save ram by writing out every 10 seqs.

[mothur.git] / classify.h

diff --git a/classify.h b/classify.h
index f13224a14fe456d8acc0a868047145492b9e62e6..1a34362ce798072d8554bb22a997b11dc16d223b 100644 (file)
--- a/classify.h
+++ b/classify.h
@@ -15,7 +15,7 @@
 
 #include "mothur.h"
 #include "database.hpp"
-#include "doTaxonomy.h"
+#include "phylotree.h"
 
 
 class Sequence;
@@ -45,10 +45,10 @@ protected:
        
        string taxFile, templateFile, simpleTax;
        vector<string> names;
-       //map<string, int> taxConfidenceScore;
        
        void readTaxonomy(string);
        vector<string> parseTax(string);
+       MothurOut* m;
 };
 
 /**************************************************************************************************/