m->mothurOut("Generating search database... "); cout.flush();
#ifdef USE_MPI
int pid, processors;
- vector<long> positions;
+ vector<unsigned long int> positions;
int tag = 2001;
MPI_Status status;
}else if ((method == "kmer") && (!needToGenerate)) {
ifstream kmerFileTest(kmerDBName.c_str());
database->readKmerDB(kmerFileTest);
-
+
ifstream fastaFile;
openInputFile(tempFile, fastaFile);
}
fastaFile.close();
}
-#endif
+#endif
+
database->setNumSeqs(names.size());
//sanity check
#ifdef USE_MPI
int pid, num, processors;
- vector<long> positions;
+ vector<unsigned long int> positions;
int tag = 2001;
MPI_Status status;