added count file to get.oturep, pre.cluster, screen.seqs, tree.shared. made remove...

[mothur.git] / classify.cpp

diff --git a/classify.cpp b/classify.cpp
index f44e66c359873f6830dac72d99fb1727a73c27ad..459c90f9ddd769628b0fc9061e7bd504a88b2900 100644 (file)
--- a/classify.cpp
+++ b/classify.cpp
@@ -61,7 +61,8 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
                                        names.push_back(temp.getName());
                                        database->addSequence(temp);    
                                }
-                               database->generateDB();
+                               if ((method == "kmer") && (!shortcuts)) {;} //don't print
+                else {database->generateDB(); }
                        }else if ((method == "kmer") && (!needToGenerate)) {    
                                ifstream kmerFileTest(kmerDBName.c_str());
                                database->readKmerDB(kmerFileTest);     
@@ -201,7 +202,7 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
                                fastaFile.close();
 
                 if ((method == "kmer") && (!shortcuts)) {;} //don't print
-                else {database->generateDB(); }
+                else {database->generateDB(); } 
                                
                        }else if ((method == "kmer") && (!needToGenerate)) {    
                                ifstream kmerFileTest(kmerDBName.c_str());