#include "kmerdb.hpp"
#include "suffixdb.hpp"
#include "blastdb.hpp"
+#include "distancedb.hpp"
/**************************************************************************************************/
Classify::Classify(string tfile, string tempFile, string method, int kmerSize, float gapOpen, float gapExtend, float match, float misMatch) : taxFile(tfile), templateFile(tempFile) {
}
else if(method == "suffix") { database = new SuffixDB(numSeqs); }
else if(method == "blast") { database = new BlastDB(gapOpen, gapExtend, match, misMatch); }
+ else if(method == "distance") { database = new DistanceDB(); }
else {
mothurOut(method + " is not a valid search option. I will run the command using kmer, ksize=8.");
mothurOutEndLine();