}
}
/**************************************************************************************************/
-Classify::Classify() { m = MothurOut::getInstance(); database = NULL; }
+Classify::Classify() { m = MothurOut::getInstance(); database = NULL; flipped=false; }
/**************************************************************************************************/
int Classify::readTaxonomy(string file) {
delete buf4;
istringstream iss (tempBuf,istringstream::in);
- iss >> name >> taxInfo;
+ iss >> name; m->gobble(iss);
+ iss >> taxInfo;
taxonomy[name] = taxInfo;
phyloTree->addSeqToTree(name, taxInfo);
}
//read template seqs and save
while (!inTax.eof()) {
- inTax >> name >> taxInfo;
-
+ inTax >> name; m->gobble(inTax);
+ inTax >> taxInfo;
+
taxonomy[name] = taxInfo;
phyloTree->addSeqToTree(name, taxInfo);