void help();
private:
- string fastafile, outputDir;
- bool abort;
- int end, fromend;
+ string fastafile, outputDir, keep;
+ bool abort, countGaps;
+ int numbases;
+
+ string getChopped(Sequence);
- string getChoppedAligned(Sequence);
- string getChoppedUnaligned(Sequence);
};
#endif