delete candidateSeq;
//report progress
- if((pDataArray->count) % 100 == 0){ pDataArray->m->mothurOut("Processing sequence: " + toString(pDataArray->count)); pDataArray->m->mothurOutEndLine(); }
+ if((pDataArray->count) % 100 == 0){ pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count) +"\n"); }
}
//report progress
- if((pDataArray->count) % 100 != 0){ pDataArray->m->mothurOut("Processing sequence: " + toString(pDataArray->count)); pDataArray->m->mothurOutEndLine(); }
+ if((pDataArray->count) % 100 != 0){ pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count)+"\n"); }
pDataArray->numNoParents = chimera->getNumNoParents();
if (pDataArray->numNoParents == pDataArray->count) { pDataArray->m->mothurOut("[WARNING]: megablast returned 0 potential parents for all your sequences. This could be due to formatdb.exe not being setup properly, please check formatdb.log for errors.\n"); }
if (inFASTA.eof()) { break; }
//report progress
- if((numSeqs) % 100 == 0){ pDataArray->m->mothurOut("Processing sequence: " + toString(numSeqs)); pDataArray->m->mothurOutEndLine(); }
+ if((numSeqs) % 100 == 0){ pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(numSeqs)+"\n"); pDataArray->m->mothurOutEndLine(); }
}
//report progress
- if((numSeqs) % 100 != 0){ pDataArray->m->mothurOut("Processing sequence: " + toString(numSeqs)); pDataArray->m->mothurOutEndLine(); }
+ if((numSeqs) % 100 != 0){ pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(numSeqs)+"\n"); }
pDataArray->numNoParents = chimera->getNumNoParents();
if (pDataArray->numNoParents == numSeqs) { pDataArray->m->mothurOut("[WARNING]: megablast returned 0 potential parents for all your sequences. This could be due to formatdb.exe not being setup properly, please check formatdb.log for errors.\n"); }