class ChimeraSlayerCommand : public Command {
public:
ChimeraSlayerCommand(string);
+ ChimeraSlayerCommand();
~ChimeraSlayerCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
Chimera* chimera;
vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
vector<string> fastaFileNames;
};