working on chimera.perseus. made removeConfidences function smarter. Fixed bug in...

[mothur.git] / chimeraslayercommand.h

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index 9a37a5ba3941a11d79c0b00ee387a3c2db2b2628..54b8fa182894fd448dff3e5a7b6548532334b258 100644 (file)
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -54,7 +54,7 @@ private:
        int setupChimera(string, map<string, int>&);
        int MPIExecute(string, string, string, string);
        int deconvoluteResults(SequenceParser*, string, string, string);
-       
+       map<string, int> priority;
 
                
        #ifdef USE_MPI
@@ -79,7 +79,7 @@ private:
 //custom data structure for threads to use.
 // This is passed by void pointer so it can be any data type
 // that can be passed using a single void pointer (LPVOID).
-typedef struct slayerData {
+struct slayerData {
        string outputFName; 
        string fasta; 
        string accnos;