1.18.0 - fixed make.shared abort issue

[mothur.git] / chimeraslayercommand.cpp

diff --git a/chimeraslayercommand.cpp b/chimeraslayercommand.cpp
index 1556cb2272c3ad3301dbbc283c04fd4c5873023c..2e897988a6d5538dbf7ef4e0ebd26564aa174fd8 100644 (file)
--- a/chimeraslayercommand.cpp
+++ b/chimeraslayercommand.cpp
@@ -84,7 +84,7 @@ string ChimeraSlayerCommand::getHelpString(){
                helpString += "The chimera.slayer command should be in the following format: \n";
                helpString += "chimera.slayer(fasta=yourFastaFile, reference=yourTemplate, search=yourSearch) \n";
                helpString += "Example: chimera.slayer(fasta=AD.align, reference=core_set_aligned.imputed.fasta, search=kmer) \n";
-               helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFastaFile).\n\n";     
+               helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFastaFile).\n";       
                return helpString;
        }
        catch(exception& e) {
@@ -321,7 +321,7 @@ ChimeraSlayerCommand::ChimeraSlayerCommand(string option)  {
                        temp = validParameter.validFile(parameters, "trim", false);                             if (temp == "not found") { temp = "f"; }
                        trim = m->isTrue(temp); 
                        
-                       temp = validParameter.validFile(parameters, "split", false);                            if (temp == "not found") { temp = "f"; }
+                       temp = validParameter.validFile(parameters, "split", false);                    if (temp == "not found") { temp = "f"; }
                        trimera = m->isTrue(temp); 
                        
                        search = validParameter.validFile(parameters, "search", false);                 if (search == "not found") { search = "distance"; }