for (int i = 0; i < querySeqs.size(); i++) {
if (chimeraFlags[i] == "yes") {
+ cout << i << endl;
if ((chimeraResults[i][0].bsa >= 90.0) || (chimeraResults[i][0].bsb >= 90.0)) {
mothurOut(querySeqs[i]->getName() + "\tyes"); mothurOutEndLine();
out << querySeqs[i]->getName() << "\tyes" << endl;
}else {
- out << querySeqs[i]->getName() << "\tno" << endl;
+ out << querySeqs[i]->getName() << "\tyes" << endl;
//mothurOut(querySeqs[i]->getName() + "\tno"); mothurOutEndLine();
}