for (int i = 0; i < refSeqs.size(); i++) { delete refSeqs[i]; }
if (chimeraFlag == "yes") {
-
+
if (realign) {
vector<string> parents;
for (int i = 0; i < Results.size(); i++) {
seen[tempIndexesRight[i]] = tempIndexesRight[i];
}
}
-
+ //string qname = q->getName().substr(0, q->getName().find_last_of('_'));
+ //cout << qname << endl;
for (int i = 0; i < mergedResults.size(); i++) {
//cout << mergedResults[i] << '\t' << db[mergedResults[i]]->getName() << endl;
}
}
-
for (int i = 0; i < mergedResults.size(); i++) {
//cout << mergedResults[i] << '\t' << db[mergedResults[i]]->getName() << endl;
if (db[mergedResults[i]]->getName() != q->getName()) {