}else if (searchMethod == "blast") {
//generate blastdb
- databaseLeft = new BlastDB(-2.0, -1.0, match, misMatch);
+ databaseLeft = new BlastDB(-1.0, -1.0, 1, -3);
+
for (int i = 0; i < templateSeqs.size(); i++) { databaseLeft->addSequence(*templateSeqs[i]); }
databaseLeft->generateDB();
databaseLeft->setNumSeqs(templateSeqs.size());
}else if (searchMethod == "blast") {
//generate blastdb
- databaseLeft = new BlastDB(-2.0, -1.0, match, misMatch);
+ databaseLeft = new BlastDB(-1.0, -1.0, 1, -3);
+
for (int i = 0; i < thisTemplate.size(); i++) { if (m->control_pressed) { return thisTemplate; } databaseLeft->addSequence(*thisTemplate[i]); }
databaseLeft->generateDB();
databaseLeft->setNumSeqs(thisTemplate.size());