}
}
//***************************************************************************************************************
+//template=self
ChimeraSlayer::ChimeraSlayer(string file, string temp, bool trim, map<string, int>& prior, string mode, int k, int ms, int mms, int win, float div,
int minsim, int mincov, int minbs, int minsnp, int par, int it, int inc, int numw, bool r) : Chimera() {
try {
}
}
+ //avoids nuisance error from formatdb for making blank blast database
+ if (userTemplate.size() == 0) {
+ return userTemplate;
+ }
+
string kmerDBNameLeft;
string kmerDBNameRight;
else { thisTemplate = getTemplate(*query, thisFilteredTemplate); } //fills this template and creates the databases
if (m->control_pressed) { return 0; }
-
if (thisTemplate.size() == 0) { return 0; } //not chimeric
//moved this out of maligner - 4/29/11