createFilter(templateSeqs, 0.0); //just removed columns where all seqs have a gap
if (searchMethod == "distance") {
- createFilter(templateSeqs, 0.0); //just removed columns where all seqs have a gap
+ //createFilter(templateSeqs, 0.0); //just removed columns where all seqs have a gap
//run filter on template copying templateSeqs into filteredTemplateSeqs
for (int i = 0; i < templateSeqs.size(); i++) {
if (chimeraFlag == "yes") {
if ((chimeraResults[0].bsa >= minBS) || (chimeraResults[0].bsb >= minBS)) {
- m->mothurOut(querySeq.getName() + "\tyes"); m->mothurOutEndLine();
+ m->mothurOut(toString(threadID) +"\t"+ querySeq.getName() + "\tyes"); m->mothurOutEndLine();
outAcc << querySeq.getName() << endl;
if (templateFileName == "self") { chimericSeqs.insert(querySeq.getName()); }