added pca command

[mothur.git] / chimeraseqscommand.h

diff --git a/chimeraseqscommand.h b/chimeraseqscommand.h
index 7721ef8e9428a9e12b1ad0e930f419389d813fca..f19a79d230642894a8bbb7ab9d459f43368fd5dd 100644 (file)
--- a/chimeraseqscommand.h
+++ b/chimeraseqscommand.h
@@ -28,9 +28,10 @@ public:
 private:
        
        bool abort;
-       string method, fastafile, templatefile, consfile, quanfile;
-       bool filter, correction;
-       int processors, midpoint, averageLeft, averageRight, window, iters, increment;
+       string method, fastafile, templatefile, consfile, quanfile, maskfile, namefile;
+       bool filter, correction, svg, printAll;
+       int processors, midpoint, averageLeft, averageRight, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity;
+       float divR;
        Chimera* chimera;