changed how we count sequences in a fastafile to allow for '>' in sequence names

[mothur.git] / chimeraseqscommand.h

diff --git a/chimeraseqscommand.h b/chimeraseqscommand.h
index 98504b0e1155f6d2254c4e89f1602381d7a2fd8e..afbc2592a389f2faa971452d2fa12e3be4fa9680 100644 (file)
--- a/chimeraseqscommand.h
+++ b/chimeraseqscommand.h
@@ -12,8 +12,6 @@
 
 #include "mothur.h"
 #include "command.hpp"
-#include "chimera.h"
-
 
 /***********************************************************/
 
@@ -26,14 +24,7 @@ public:
        
                
 private:
-       
-       bool abort;
-       string method, fastafile, templatefile, consfile, quanfile, maskfile, namefile;
-       bool filter, correction, svg;
-       int processors, midpoint, averageLeft, averageRight, window, iters, increment, numwanted, ksize;
-       Chimera* chimera;
-       
-       
+
 };
 
 /***********************************************************/