added name option to read.tree for use in unifrac and parimony commands

[mothur.git] / chimeraseqscommand.h

diff --git a/chimeraseqscommand.h b/chimeraseqscommand.h
index 9bc8418bcab65820f56b13959c6cbba0110ea935..46e2bc88300c7a3e89f8fb985100d6edd50129a1 100644 (file)
--- a/chimeraseqscommand.h
+++ b/chimeraseqscommand.h
@@ -28,9 +28,10 @@ public:
 private:
        
        bool abort;
-       string method, fastafile, templatefile, consfile;
-       bool filter, correction;
-       int processors, midpoint, averageLeft, averageRight, window, iters, increment;
+       string method, fastafile, templatefile, consfile, quanfile, maskfile, namefile, outputDir;
+       bool filter, correction, svg, printAll;
+       int processors, midpoint, averageLeft, averageRight, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity;
+       float divR;
        Chimera* chimera;