private:
bool abort;
- string method, fastafile, templatefile, consfile, quanfile;
- bool filter, correction;
- int processors, midpoint, averageLeft, averageRight, window, iters, increment;
+ string method, fastafile, templatefile, consfile, quanfile, maskfile, namefile, outputDir;
+ bool filter, correction, svg, printAll;
+ int processors, midpoint, averageLeft, averageRight, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity;
+ float divR;
Chimera* chimera;