fixed bug with realigner for chimera slayer

[mothur.git] / chimerarealigner.h

diff --git a/chimerarealigner.h b/chimerarealigner.h
index 2b53841e241806c435a0a8f30b7c444b6050739f..dec41ef716eb9bcd35864bb461ade028786b2133 100644 (file)
--- a/chimerarealigner.h
+++ b/chimerarealigner.h
@@ -25,11 +25,11 @@ class ChimeraReAligner  {
                                
        private:
                Sequence* querySeq;
-               Alignment* alignment;
                vector<Sequence*> templateSeqs;
                int match, misMatch;
                
                Sequence* getSequence(string);  //find sequence from name
+               MothurOut* m;
 };
 /***********************************************************/