private:
struct linePair {
- int start;
+ unsigned long int start;
int numSeqs;
- linePair(long int i, int j) : start(i), numSeqs(j) {}
+ linePair(unsigned long int i, int j) : start(i), numSeqs(j) {}
};
vector<int> processIDS; //processid
vector<linePair*> lines;
int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector<long>&);
#endif
- bool abort, filter, MPIWroteAccnos;
+ bool abort, filter;
string fastafile, templatefile, consfile, quanfile, maskfile, outputDir, inputDir;
int processors, window, increment, numSeqs, templateSeqsLength;
Chimera* chimera;