modified makefile and sensspeccommand files

[mothur.git] / chimerapintailcommand.h

diff --git a/chimerapintailcommand.h b/chimerapintailcommand.h
index 0ddfc1c6229758991e74b0def36a778182a74da6..65e67fe0f92fb86df0abd757c4b06167dc024992 100644 (file)
--- a/chimerapintailcommand.h
+++ b/chimerapintailcommand.h
@@ -43,10 +43,12 @@ private:
        int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector<long>&);
        #endif
 
-       bool abort, filter, MPIWroteAccnos;
-       string fastafile, templatefile, consfile, quanfile, maskfile, outputDir;
+       bool abort, filter;
+       string fastafile, templatefile, consfile, quanfile, maskfile, outputDir, inputDir;
        int processors, window, increment, numSeqs, templateSeqsLength;
        Chimera* chimera;
+       vector<string> outputNames;
+       vector<string> fastaFileNames;
        
        
 };