vector<string> setParameters();
string getCommandName() { return "chimera.perseus"; }
string getCommandCategory() { return "Sequence Processing"; }
+ string getOutputFileNameTag(string, string);
string getHelpString();
string getCitation() { return "http://www.mothur.org/wiki/Chimera.perseus\n"; }
string getDescription() { return "detect chimeric sequences"; }
bool abort;
string fastafile, groupfile, outputDir, namefile;
- int processors;
+ int processors, alignLength;
double cutoff, alpha, beta;
vector<string> outputNames;
}
};
/**************************************************************************************************/
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
#else
static DWORD WINAPI MyPerseusThreadFunction(LPVOID lpParam){
perseusData* pDataArray;