added forward and reverse barcodes to trim.seqs to process illumina seqs

[mothur.git] / chimeraperseuscommand.h

diff --git a/chimeraperseuscommand.h b/chimeraperseuscommand.h
index 84563ac6ecc006ca7150f7f5e025b340da964fdf..01f5768a0c070c70aa6c7264b6d482b3636d7148 100644 (file)
--- a/chimeraperseuscommand.h
+++ b/chimeraperseuscommand.h
@@ -44,7 +44,7 @@ private:
        
        bool abort;
        string fastafile, groupfile, outputDir, namefile;
-       int processors;
+       int processors, alignLength;
        double cutoff, alpha, beta;
        
        vector<string> outputNames;
@@ -98,7 +98,7 @@ struct perseusData {
        }
 };
 /**************************************************************************************************/
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
 #else
 static DWORD WINAPI MyPerseusThreadFunction(LPVOID lpParam){ 
        perseusData* pDataArray;