querySeqs = readSeqs(fastafile);
mothurOut("Done.");
//templateSeqs = readSeqs(templateFile);
- templateDB = new AlignmentDB(templateFile, "kmer", kmerSize, 0,0,0,0);
+ templateDB = new AlignmentDB(templateFile, "kmer", kmerSize, 0.0,0.0,0.0,0.0);
mothurOutEndLine();
int numSeqs = querySeqs.size();