kmerSize = k;
outputDir = o;
- templateDB = new AlignmentDB(templateFileName, "kmer", kmerSize, 0.0,0.0,0.0,0.0);
+ templateDB = new AlignmentDB(templateFileName, "kmer", kmerSize, 0.0,0.0,0.0,0.0, rand());
m->mothurOutEndLine();
kmer = new Kmer(kmerSize);
}
}
//***************************************************************************************************************
-Sequence* ChimeraCheckRDP::print(ostream& out, ostream& outAcc) {
+Sequence ChimeraCheckRDP::print(ostream& out, ostream& outAcc) {
try {
m->mothurOut("Processing: " + querySeq->getName()); m->mothurOutEndLine();
}
}
- return NULL;
+ return *querySeq;
}
catch(exception& e) {
m->errorOut(e, "ChimeraCheckRDP", "print");
}
#ifdef USE_MPI
//***************************************************************************************************************
-Sequence* ChimeraCheckRDP::print(MPI_File& out, MPI_File& outAcc) {
+Sequence ChimeraCheckRDP::print(MPI_File& out, MPI_File& outAcc) {
try {
cout << "Processing: " << querySeq->getName() << endl;
}
}
- return NULL;
+ return *querySeq;
}
catch(exception& e) {
m->errorOut(e, "ChimeraCheckRDP", "print");