removed UWSig and WSig from output if user does not set random=T

[mothur.git] / chimeracheckcommand.h

diff --git a/chimeracheckcommand.h b/chimeracheckcommand.h
index 9238871de8d8564bb375087800f00c06591698cb..350e10ea4bbbfc5bee07906e93edb029e996dc5f 100644 (file)
--- a/chimeracheckcommand.h
+++ b/chimeracheckcommand.h
@@ -29,7 +29,8 @@ public:
        string getCommandCategory()             { return "Sequence Processing"; }
        string getHelpString(); 
        string getCitation() { return "CHIMERA_CHECK version 2.7 written by Niels Larsen (http://wdcm.nig.ac.jp/RDP/docs/chimera_doc.html) \nhttp://www.mothur.org/wiki/Chimera.check"; }
-
+       string getDescription()         { return "detect chimeric sequences"; }
+       
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }  
        
@@ -52,7 +53,7 @@ private:
        int driverMPI(int, int, MPI_File&, MPI_File&, vector<unsigned long int>&);
        #endif
 
-       bool abort, svg;
+       bool abort, svg, save;
        string fastafile, templatefile, namefile, outputDir;
        int processors, increment, ksize, numSeqs, templateSeqsLength;
        Chimera* chimera;