modified makefile and sensspeccommand files

[mothur.git] / chimeraccodecommand.h

diff --git a/chimeraccodecommand.h b/chimeraccodecommand.h
index 9a0efb951348b7f0a0f1bc511eb76facb21c6d9f..c3d71c920ee2d84e8c6a2738e21cbcb840d4a8c5 100644 (file)
--- a/chimeraccodecommand.h
+++ b/chimeraccodecommand.h
@@ -42,10 +42,12 @@ private:
        int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector<long>&);
        #endif
 
-       bool abort, filter, MPIWroteAccnos;
+       bool abort, filter;
        string fastafile, templatefile, outputDir, maskfile;
        int processors, window, numwanted, numSeqs, templateSeqsLength;
        Chimera* chimera;
+       vector<string> fastaFileNames;
+       vector<string> outputNames;
        
        
 };