another pds fix to sffinfo

[mothur.git] / chimeraccodecommand.h

diff --git a/chimeraccodecommand.h b/chimeraccodecommand.h
index 9a0efb951348b7f0a0f1bc511eb76facb21c6d9f..5989eb25e0c5c1488e8bdf69e03157bbe1e7e6fd 100644 (file)
--- a/chimeraccodecommand.h
+++ b/chimeraccodecommand.h
@@ -28,9 +28,9 @@ public:
 private:
 
        struct linePair {
-               int start;
+               unsigned long int start;
                int numSeqs;
-               linePair(long int i, int j) : start(i), numSeqs(j) {}
+               linePair(unsigned long int i, int j) : start(i), numSeqs(j) {}
        };
        vector<int> processIDS;   //processid
        vector<linePair*> lines;
@@ -39,13 +39,15 @@ private:
        int createProcesses(string, string, string);
        
        #ifdef USE_MPI
-       int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector<long>&);
+       int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector<unsigned long int>&);
        #endif
 
-       bool abort, filter, MPIWroteAccnos;
+       bool abort, filter;
        string fastafile, templatefile, outputDir, maskfile;
        int processors, window, numwanted, numSeqs, templateSeqsLength;
        Chimera* chimera;
+       vector<string> fastaFileNames;
+       vector<string> outputNames;
        
        
 };