class ChimeraBellerophonCommand : public Command {
public:
ChimeraBellerophonCommand(string);
+ ChimeraBellerophonCommand();
~ChimeraBellerophonCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map< string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
string fastafile, outputDir;
int processors, window, increment, numSeqs;
Chimera* chimera;
+ vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
+ vector<string> fastaFileNames;
};
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