class ChimeraBellerophonCommand : public Command {
public:
ChimeraBellerophonCommand(string);
+ ChimeraBellerophonCommand();
~ChimeraBellerophonCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map< string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
int processors, window, increment, numSeqs;
Chimera* chimera;
vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
vector<string> fastaFileNames;
};