adds group parameter to chimera.uchime so you can check for chimeras with template...

[mothur.git] / chimera.h

diff --git a/chimera.h b/chimera.h
index 9c5a21995c2acd71516b4e3a9cf53732b10b54f9..1df4d6b2122d88318193a74d906e601e9cd214a1 100644 (file)
--- a/chimera.h
+++ b/chimera.h
@@ -133,9 +133,9 @@ struct sim {
 };
 
 struct linePair {
-                       unsigned long int start;
-                       unsigned long int end;
-                       linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
+                       unsigned long long start;
+                       unsigned long long end;
+                       linePair(unsigned long long i, unsigned long long j) : start(i), end(j) {}
                        linePair(){}
 };
 
@@ -160,6 +160,7 @@ class Chimera {
                virtual Sequence print(ostream&, ostream&){  Sequence temp; return temp; }
                virtual Sequence print(ostream&, ostream&, data_results, data_results) { Sequence temp; return temp; }
                virtual int print(ostream&, ostream&, string){  return 0; }
+               virtual int getNumNoParents(){  return 0; }
                virtual data_results getResults() { data_results results; return results; }
                
                #ifdef USE_MPI