Merge remote-tracking branch 'origin/master'

[mothur.git] / catchallcommand.h

diff --git a/catchallcommand.h b/catchallcommand.h
index 583191db8d547996bef24378fb2dfd50b7ac0a13..44ed3ef162b0a82465c1662f2f19e73d43468f86 100644 (file)
--- a/catchallcommand.h
+++ b/catchallcommand.h
@@ -30,8 +30,11 @@ public:
        
        vector<string> setParameters();
        string getCommandName()                 { return "catchall";                    }
-       string getCommandCategory()             { return "Hypothesis Testing";  }
+       string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
+       string getCitation() { return "Bunge J, Woodard L, Bohning D, Foster JA, Connolly S, Allen HK (2012). Estimating population diversity with CatchAll. Bioinformatics  28:1045.\nhttp://www.northeastern.edu/catchall/index.html\nhttp://www.mothur.org/wiki/Catchall"; }
+       string getDescription()         { return "estimate number of species"; }
        
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }