added summary output to catchall command

[mothur.git] / catchallcommand.h

diff --git a/catchallcommand.h b/catchallcommand.h
index 186185d5ea68b08b969b6a99ef090ff75d5af72a..4406361a37230aced27bbaa4ca62c3f42bcd4db3 100644 (file)
--- a/catchallcommand.h
+++ b/catchallcommand.h
@@ -41,13 +41,14 @@ private:
        ReadOTUFile* read;
        InputData* input;
        
-       string outputDir, sabundfile, rabundfile, listfile, format;
+       string outputDir, sabundfile, rabundfile, listfile, format, path;
        bool abort, allLines;
        set<string> labels;
        vector<string> outputNames;
        map< string, vector<string> > outputTypes;
        
        string process(SAbundVector*);
+       int createSummaryFile(string, string, ofstream&); 
 };
 
 /****************************************************************************/