fixed bug with trim.seqs allfiles=t

[mothur.git] / catchallcommand.cpp

diff --git a/catchallcommand.cpp b/catchallcommand.cpp
index 3effaf4eaafe09659252e6f93fa81f31dcc4e1db..29f2220dcc512d7a5db58bfee3c3767418ff7aa7 100644 (file)
--- a/catchallcommand.cpp
+++ b/catchallcommand.cpp
@@ -8,7 +8,6 @@
  */
 
 #include "catchallcommand.h"
-#include "globaldata.hpp"
 
 //**********************************************************************************************************************
 vector<string> CatchAllCommand::setParameters(){       
@@ -73,6 +72,7 @@ CatchAllCommand::CatchAllCommand(string option)  {
                
                //allow user to run help
                if(option == "help") { help(); abort = true; calledHelp = true; }
+               else if(option == "citation") { citation(); abort = true; calledHelp = true;}
                
                else {
                        vector<string> myArray = setParameters();