upgraded tests of read_sff

[biopieces.git] / bp_test / out / read_sff.out.1

diff --git a/bp_test/out/read_sff.out.1 b/bp_test/out/read_sff.out.1
index 299cfe32fcdb18724cf2aa1b77f1ef6711fcffc9..d1c35ce30c98234c53987acf3afd7bcf86d43181 100644 (file)
--- a/bp_test/out/read_sff.out.1
+++ b/bp_test/out/read_sff.out.1
@@ -3,88 +3,108 @@ SEQ: TCAGTCATATTTTTTAGAAACATGTTTGTTTGGACTCATTAATTCATGATTAAAATCACCATCATTCGTTATCAA
 SEQ_LEN: 279
 CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 277
-CLIP_ADAPTOR_LEFT: 0
-CLIP_ADAPTOR_RIGHT: 0
-SCORES: aaa`[[[_[NNNNNNTUP[[__`abbcccddddeeeeeeedddcdcccc``bbbbaaaba_`````bbbbba````____\\\\``_aabbbbbbbba````_WVV\\bbbb``\\`^_bXbbb_`_``bbbbbaaabbb___aabbaaa[[UUUbbbZZZZZabbbbbcaa[[UUU[[[[aabbbac____aPPNNNNPP]PPPWWabaaaabbbbbbbaaabbbbbaaabbbXXX__XXXXXXXXXXUYYUUUY[UUUYUUUUYXXMMMMRKMMMMM
+CLIP_ADAPTOR_LEFT: -1
+CLIP_ADAPTOR_RIGHT: -1
+SCORES: BBBA<<<@<//////561<<@@ABCCDDDEEEEFFFFFFFEEEDEDDDDAACCCCBBBCB@AAAAACCCCCBAAAA@@@@====AA@BBCCCCCCCCBAAAA@877==CCCCAA==A?@C9CCC@A@AACCCCCBBBCCC@@@BBCCBBB<<666CCC;;;;;BCCCCCDBB<<666<<<<BBCCCBD@@@@B11////11>11188BCBBBBCCCCCCCBBBCCCCCBBBCCC999@@99999999996::666:<666:6666:99....3,.....
+X_POS: 1426
+Y_POS: 1923
 ---
 SEQ_NAME: FQIBXOY01AV4UR
 SEQ: TCAGCTTGAGCAAATTCTTTATCTTTAAAATTAAACATTTTGTTGAAATTACTGTATCTTTAAAACTTAGATTCAATCGCTTCTTTTATTCTCTTCTGATGACACTCCTACTTGATTCGCAATAACTCAATCCAAACGACCAACCAATGTCAGCTAATTCATCAAGTTGTACGTCTAACGGCTTACCTGGTTTCTTCTTCCAGTTCTTGAACGTTTCCTAATGTGTTAAACCAACTTCTAAAGAAATTCAACCACATACGCAATCTTGCTATCTCGTAAATTTAAGTTG
 SEQ_LEN: 289
 CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 69
-CLIP_ADAPTOR_LEFT: 0
-CLIP_ADAPTOR_RIGHT: 0
-SCORES: ```````````UUU\\`[[[]Wa]XXMMMMKKIIIRKMMMMRIIYY[[QQNSQ[[^^\]]][[XXRNNMXYZ\ZZZ[[XWXX[[[\[^JJRW\\WVVVV\\ZUUUUUUOOOMMMMVZSSRSSPPPPYXXXWVVWMMMSKMMMMMMMMMSVVVXXXSUOOOO\\UUUSOOOUUWWURSSUSMMMMMRRMMMUUMLIIRPTRRLLLLOOSRRRWWUUUOOMOOOSTTTTQQQKKIIKKKQKKKKKKMMKKKKKKKKKRUUUUUUVVVVVUTTUUURRPOKKKMMMKHKHHR
+CLIP_ADAPTOR_LEFT: -1
+CLIP_ADAPTOR_RIGHT: -1
+SCORES: AAAAAAAAAAA666==A<<<>8B>99....,,***3,....3**::<<22/42<<??=>>><<993//.9:;=;;;<<9899<<<=<?++38==87777==;666666000....7;443441111:9998778...4,.........4777999460000==66640006688634464.....33...66.-**31533----0043338866600.00045555222,,**,,,2,,,,,,..,,,,,,,,,3666666777776556663310,,,...,),))3
+X_POS: 248
+Y_POS: 3585
 ---
 SEQ_NAME: FQIBXOY01CU7IT
 SEQ: TCAGTTCGTAAAAGTGTGATAGATGATGGCAGATGTTATCTCTGTCCGTGTCTAGGCTATCCAAGACAATGGCGTTCAGAAGATATTTACCAGGAAATAAATGAGACGATACAAATAATAGAAATTTAAAATGCGCAAACCTGACCCAGTTTGCGCATTTTATGTTTTACACACGCGAGTAATGTGTTTACTTACGTGTGTTTATTTTGTTGCTGATTTTCAATTGTATATGAATGTGGTTGCACATAAATGCACTTTC
 SEQ_LEN: 259
 CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 257
-CLIP_ADAPTOR_LEFT: 0
-CLIP_ADAPTOR_RIGHT: 0
-SCORES: eeeeeeeeeeeeeeeeeeeeeehhhghffgghhhhgghhhhhhhgffhheeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeaaadeeeda]]]ddeeeeeeeeeeeeeeeeeedddedd]]]]dddeeeeeeeeeeeeeeeeedddeeedddddeeeeeeeeeeeeeeeeeeeeeedd\\\ddddeeeeeeeddddddddeeeeeeeeeeeedddddddedddddddddddaaadddddVVRY__]YPPMO
+CLIP_ADAPTOR_LEFT: -1
+CLIP_ADAPTOR_RIGHT: -1
+SCORES: FFFFFFFFFFFFFFFFFFFFFFIIIHIGGHHIIIIHHIIIIIIIHGGIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBBBEFFFEB>>>EEFFFFFFFFFFFFFFFFFFEEEFEE>>>>EEEFFFFFFFFFFFFFFFFFEEEFFFEEEEEFFFFFFFFFFFFFFFFFFFFFFEE===EEEEFFFFFFFEEEEEEEEFFFFFFFFFFFFEEEEEEEFEEEEEEEEEEEBBBEEEEE773:@@>:11.0
+X_POS: 1058
+Y_POS: 1859
 ---
 SEQ_NAME: FQIBXOY01CEZSI
 SEQ: TCAGAGGTTATGACGTTAAAGCTATTGATGGTCATTCGAACATAACAGAAGCAAGTTTGAAAAGTTCCAAAATATTTGTAATTCCTGAGGCTAACATTCCTTTCAAAGAATCAGAACAGGCAGCAATTGTTAAATATGTGAAACAAGGTGGCAATGTTGTCTTTATTTCAGATCATTACAATGCTGACCGAAATTTAAATCGTATTGATTCATCGGAGGCAATGAATGGTTATCGACGTGGAGCATATGAAGATATG
 SEQ_LEN: 257
 CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 253
-CLIP_ADAPTOR_LEFT: 0
-CLIP_ADAPTOR_RIGHT: 0
-SCORES: eeeeeeeeeeeeeeeeedddddfhhfffffhfhhhhhhhhhhhhhhhhfeeeeeeddcccceeeeeeeeeeeeecccc```ddeeeedddddddeeddddeedd```eeeeeeeeeeeeeeeeeeeeeeeecccddeeee\\\deeeeeeeeeeeeeeeeeeeeeeeeeccceeeeeeeeeeeeeeeeed\\\ccceeeeeeeeeeeedddeeeeeeeeedddddddeefeddddddddddaaaddddd____^YYY
+CLIP_ADAPTOR_LEFT: -1
+CLIP_ADAPTOR_RIGHT: -1
+SCORES: FFFFFFFFFFFFFFFFFEEEEEGIIGGGGGIGIIIIIIIIIIIIIIIIGFFFFFFEEDDDDFFFFFFFFFFFFFDDDDAAAEEFFFFEEEEEEEFFEEEEFFEEAAAFFFFFFFFFFFFFFFFFFFFFFFFDDDEEFFFF===EFFFFFFFFFFFFFFFFFFFFFFFFFDDDFFFFFFFFFFFFFFFFFE===DDDFFFFFFFFFFFFEEEFFFFFFFFFEEEEEEEFFGFEEEEEEEEEEBBBEEEEE@@@@?:::
+X_POS: 873
+Y_POS: 3104
 ---
 SEQ_NAME: FQIBXOY01C4ETH
 SEQ: TCAGTGAAACAAACACGCAACAATCATTTGCTAATTGTAAGCAACTTAGACAAGTATATCCGAATGGTGTCACTGCCGATCATCCAGCATATCGACCACATTTAGATAGAGATAAAGATAAACGTGCATGTGAACCTGATAAATATTAAACAACAAGCGAATTGAATTCAAATTGTATTTAGCTTTATGCACTAATCACATAGTAAATAATGAGGGAGATTTTTTAGGCATGAGCAATCAATTCAAAAG
 SEQ_LEN: 249
 CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 248
-CLIP_ADAPTOR_LEFT: 0
-CLIP_ADAPTOR_RIGHT: 0
-SCORES: eeeeeeeeeeeeeeeeeeeeeehgffaaahheggeddddddddegggfgeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeddddeeeeeeeeeeeeeeeeeedddeeedddddeeeeeeeeeeeeeeeeeeeeeeedd\\\adeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee`_____aaaddaaadddddd[[[[dZZZZ^
+CLIP_ADAPTOR_LEFT: -1
+CLIP_ADAPTOR_RIGHT: -1
+SCORES: FFFFFFFFFFFFFFFFFFFFFFIHGGBBBIIFHHFEEEEEEEEFHHHGHFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEEFFFFFFFFFFFFFFFFFFEEEFFFEEEEEFFFFFFFFFFFFFFFFFFFFFFFEE===BEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFA@@@@@BBBEEBBBEEEEEE<<<<E;;;;?
+X_POS: 1163
+Y_POS: 1139
 ---
 SEQ_NAME: FQIBXOY01BXD7A
 SEQ: TCAGAAAAGCTTTATAATTTTATAATTGCTAAATCTTTTCAACAACCAGTTGGAAGTACGTTCACTTATGGTGAATTAAGAAAGAAATATAATGTGGTTTGTAGCACGAATGATCAACGTGAAGTAGGACGTCGTTTTGCTTACTGGATTAAGTACACGCCAGGATTACCATTTAAAATGTAGGAACAAAAAATGGCAGTTATTATATCAGAAATAGGGATAAACCCATGTCAATAATAGCACGCCTTCGAAAGGAGGTGATTGCTAATGAGTTACACNTTAGTTTG
 SEQ_LEN: 287
 CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 177
-CLIP_ADAPTOR_LEFT: 0
-CLIP_ADAPTOR_RIGHT: 0
-SCORES: ]]]XRRRR^^[[[^[^^^^^^[PTRWW```^^^WYW^^_^^]\XXVWWYXXWWXX\a\^^[[[\^^^^\]]\\XXXXVVXPPPVUWW]Z\\\^^^^^`^^WUW````^^^``__^^^^`^^[[[_\\\\\\\UPPPPPMVXXZXQUUVVVZZ^\XUUUUUUYZUOOMMMWWUUUMMMMJMMWRRMMMNNNNNNRRWURLLLRPPRTUUULLLLLRMUUURQOSSXTTMOOOWWWWWTTOQQQKKKQKKKKKKKKKKOKKKPKKKKPRROPKKKPRPOO@KKPPLKKK
+CLIP_ADAPTOR_LEFT: -1
+CLIP_ADAPTOR_RIGHT: -1
+SCORES: >>>93333??<<<?<??????<15388AAA???8:8??@??>=99788:998899=B=??<<<=????=>>==99997791117688>;===?????A??868AAAA???AA@@????A??<<<@=======611111.799;9266777;;?=9666666:;600...88666....+..833...//////33863---31135666-----3.66632044955.00088888550222,,,2,,,,,,,,,,0,,,1,,,,13301,,,13100!,,11-,,,
+X_POS: 673
+Y_POS: 1172
 ---
 SEQ_NAME: FQIBXOY01BWE7M
 SEQ: TCAGTATGATGACGGCTAATGATGATGTAGAGGCGCCGAGTGACTTTGAAAAAATCAGAGCTGAAGTTTCATGGTAATAGATATTATCATTTTTGAATTAATTATATTAATGTGTTTAGCAATAGCACTGGAGGTGTTGTAAATATGTGGATTGTCATTTCAATTGTTTTATCTATATTTTTATTGATCTTGTTAAGTAGCATTTCTCATAAGATGAAAACCATAGAAGCATTGGAGTATATGAATG
 SEQ_LEN: 247
 CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 242
-CLIP_ADAPTOR_LEFT: 0
-CLIP_ADAPTOR_RIGHT: 0
-SCORES: eeeeeeeeeeeeedddeeeeeehhhhhhhhhhhhhhhhhhhhhhhhff__ff__eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeedddeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeaafddddaaadddddddeddddddddd
+CLIP_ADAPTOR_LEFT: -1
+CLIP_ADAPTOR_RIGHT: -1
+SCORES: FFFFFFFFFFFFFEEEFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIGG@@GG@@FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBBGEEEEBBBEEEEEEEFEEEEEEEEE
+X_POS: 662
+Y_POS: 880
 ---
 SEQ_NAME: FQIBXOY01A2RM8
 SEQ: TCAGAAACTAAAAAACTTAAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTATTTTTGAATATAAATATTTAGTTCATGGCATTTCTAGTTACATGACGTCCATGAATTAAGAAGTAAACAAGCATAGTAATGATTGCTAAAGCGGCCATAAAGCCGAAGATTTCACTATATGAAAACATATGAGTAAATAACCCAAGGAATGATGGACCGAAGCCGAC
 SEQ_LEN: 264
 CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 261
-CLIP_ADAPTOR_LEFT: 0
-CLIP_ADAPTOR_RIGHT: 0
-SCORES: ```^OOO[ULLLLLLS[[IIIIII[[`````bbbccddcccddddddddbbbbbbbbbbb__^_^[TTT__`bbbb`^_^bbbbbbbbb``YY^^Y`JJJJJZZZ]]XXZ``[TTTZ``]bbb`___ZZZ_]bb````^__b_^_^^`````bbbbbbbbb```b`````bbbb``]]]bb`]YSRRR`````]QQQR]]]`]]]]`b``XXX]`XXXXYYVVMVSZZZXSNNNNKKNNVXXSSSV][VPPPYYYYYYYYYYYY
+CLIP_ADAPTOR_LEFT: -1
+CLIP_ADAPTOR_RIGHT: -1
+SCORES: AAA?000<6------4<<******<<AAAAACCCDDEEDDDEEEEEEEECCCCCCCCCCC@@?@?<555@@ACCCCA?@?CCCCCCCCCAA::??:A+++++;;;>>99;AA<555;AA>CCCA@@@;;;@>CCAAAA?@@C@?@??AAAAACCCCCCCCCAAACAAAAACCCCAA>>>CCA>:4333AAAAA>2223>>>A>>>>ACAA999>A9999::77.74;;;94////,,//7994447><7111::::::::::::
+X_POS: 324
+Y_POS: 1762
 ---
 SEQ_NAME: FQIBXOY01API7E
 SEQ: TCAGCAATAGATATAATTTATGGTTTATATCTATTTCGGCATCTTTACCTTTCACTTGTTCAACTTATGTACCATAAATACTTCTGACAAGTTACTAATTAAACATGCAACCTCTAACTCAATTTAATATTTTAACTAACTTGTAATATACAGGATTCATCACGCATAATCAACCCTGTAAAACTTGATACGCAATAAAAGTTTTAAAGCATTTTATTGCGACAACTGTCTATCTATGTTTTTTCAAACGAATTTCATCAACTAGATTCCAGATAAATTC
 SEQ_LEN: 280
 CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 278
-CLIP_ADAPTOR_LEFT: 0
-CLIP_ADAPTOR_RIGHT: 0
-SCORES: eeeeeeeeeeeeeeeeeeeeeeggfffffhffffffffffefeeeefeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeddddddeeeeeeeeeeeeeeeeedddeeeeeeeeee``\\\``eeddddeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeccccdddeeeeeedccccdeeeee```ceeee````WWceeeeeccccceedddddddddddddda\[[[^]]]adaaad_____________^^^_\\\\^___\\\\\\
+CLIP_ADAPTOR_LEFT: -1
+CLIP_ADAPTOR_RIGHT: -1
+SCORES: FFFFFFFFFFFFFFFFFFFFFFHHGGGGGIGGGGGGGGGGFGFFFFGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEEEEFFFFFFFFFFFFFFFFFEEEFFFFFFFFFFAA===AAFFEEEEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFDDDDEEEFFFFFFEDDDDEFFFFFAAADFFFFAAAA88DFFFFFDDDDDFFEEEEEEEEEEEEEEB=<<<?>>>BEBBBE@@@@@@@@@@@@@???@====?@@@======
+X_POS: 173
+Y_POS: 2792
 ---
 SEQ_NAME: FQIBXOY01BJJRF
 SEQ: TCAGTAACTATCAAATAAAATGATAACGGTTTCATCTATCTATTTTATCGGTCTAGTGGCTGATTTCAAGCTAGAAATATTGAATGACAATACAACTCTGTTAAAATGATGGACGTAGACAAATATGCGTATTGACGCTTTATTTTAAAAATTAACATGCTTATAACATGTTTATAGAAGGAGATTAACCTATGAACTATCAAGTTCTTTTATATTATAAATATATGACGATTGATGACCCTGAACAGTTTGCTCAGGATCAC
 SEQ_LEN: 263
 CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 260
-CLIP_ADAPTOR_LEFT: 0
-CLIP_ADAPTOR_RIGHT: 0
-SCORES: cccc```ccbbb___bXXXXbbcccegeeddffffffedddecdddccccbbbccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccbbbccccccccbbbbccccccccccccccccccccccccccccccccccccccVVVVVVaccbbbcccccccccccccccccccccccccccccccccccaaaaccccccccccccaWRR\YVVVVVVYYYY
+CLIP_ADAPTOR_LEFT: -1
+CLIP_ADAPTOR_RIGHT: -1
+SCORES: DDDDAAADDCCC@@@C9999CCDDDFHFFEEGGGGGGFEEEFDEEEDDDDCCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDCCCDDDDDDDDCCCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD777777BDDCCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDBBBBDDDDDDDDDDDDB833=:777777::::
+X_POS: 515
+Y_POS: 2361
 ---