void help();
private:
- void createTree(ostream*, Tree*);
+ int createTree(ostream*, Tree*);
void printSims();
- void process(SharedOrderVector*);
+ int process(SharedOrderVector*);
GlobalData* globaldata;
vector<SharedRAbundVector*> lookup;
bool abort, allLines;
- set<int> lines; //hold lines to be used
set<string> labels; //holds labels to be used
- string outputFile, calc, groups, line, label;
+ string outputFile, calc, groups, label, outputDir;
int numGroups, iters;
- vector<string> Estimators, Groups; //holds estimators to be used
+ vector<string> Estimators, Groups, outputNames; //holds estimators to be used
};