finished work on classify.seqs bayesian method and various bug fixes

[mothur.git] / bootstrapsharedcommand.h

diff --git a/bootstrapsharedcommand.h b/bootstrapsharedcommand.h
index ee393f9eb3fecd8cac0ddfbea3c5e69863b8a621..794da84001135d9b1ab365fc9014ed021a467d38 100644 (file)
--- a/bootstrapsharedcommand.h
+++ b/bootstrapsharedcommand.h
@@ -19,7 +19,7 @@
 #include "tree.h"
 #include "treemap.h"
 #include "sharedutilities.h"
-#include "concensuscommand.h"
+#include "consensuscommand.h"
        
 class GlobalData;
 
@@ -43,7 +43,7 @@ private:
        TreeMap* tmap;
        Tree* t;
        Tree* tempTree;
-       ConcensusCommand* concensus;
+       ConcensusCommand* consensus;
        vector< vector<Tree*> > trees;  //a vector of trees for each calculator chosen
        vector<Calculator*> treeCalculators;
        vector<ofstream*> out;
@@ -55,9 +55,8 @@ private:
        vector<SharedRAbundVector*> lookup;
 
        bool abort, allLines;
-       set<int> lines; //hold lines to be used
        set<string> labels; //holds labels to be used
-       string outputFile, calc, groups, line, label;
+       string outputFile, calc, groups, label;
        int numGroups, iters;
        vector<string>  Estimators, Groups; //holds estimators to be used