added otu.association command. added calcSpearman, calcKendall and calcPearson functi...

[mothur.git] / bootstrapsharedcommand.cpp

diff --git a/bootstrapsharedcommand.cpp b/bootstrapsharedcommand.cpp
index 783016ac0738b1f31fa0aee05fbd0fb5a0be8228..de9657420aabb0f8dd817a7bfe1fb4339bc3144e 100644 (file)
--- a/bootstrapsharedcommand.cpp
+++ b/bootstrapsharedcommand.cpp
@@ -140,7 +140,7 @@ BootSharedCommand::BootSharedCommand(string option) {
                        if (groups == "not found") { groups = ""; }
                        else { 
                                m->splitAtDash(groups, Groups);
-                               m->Groups = Groups;
+                               m->setGroups(Groups);
                        }
                                
                        calc = validParameter.validFile(parameters, "calc", false);                     
@@ -157,7 +157,7 @@ BootSharedCommand::BootSharedCommand(string option) {
 
                        string temp;
                        temp = validParameter.validFile(parameters, "iters", false);  if (temp == "not found") { temp = "1000"; }
-                       convert(temp, iters); 
+                       m->mothurConvert(temp, iters); 
                                
                        if (abort == false) {