*/
#include "mothur.h"
+#include "globaldata.hpp"
class BlastDB : public Database {
public:
BlastDB(string, float, float, float, float);
~BlastDB();
- Sequence* findClosestSequence(Sequence*);
+ Sequence findClosestSequence(Sequence*);
private:
string dbFileName;
string queryFileName;
string blastFileName;
+ string path;
float gapOpen;
float gapExtend;
float match;
float misMatch;
- Sequence* emptySequence;
+ Sequence emptySequence;
+ GlobalData* globaldata;
};
#endif