changes for chimera slayer

[mothur.git] / blastdb.hpp

diff --git a/blastdb.hpp b/blastdb.hpp
index d61aaecb5e0712b47458e000416b881719cc7e65..9b8965d017b69a8f8cf27884261ea1095f77e176 100644 (file)
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -12,7 +12,6 @@
  */
 
 #include "mothur.h"
-#include "globaldata.hpp"
 
 class BlastDB : public Database {
 
@@ -24,12 +23,7 @@ public:
        void generateDB();
        void addSequence(Sequence);
        vector<int> findClosestSequences(Sequence*, int);
-       vector<int> findClosestMegaBlast(Sequence*, int);
-       
-       #ifdef USE_MPI  
-       int MPISend(int); //just sends gapOpen, gapExtend, match and mismatch
-       int MPIRecv(int);
-       #endif
+       vector<int> findClosestMegaBlast(Sequence*, int, int);
        
 private:
        string dbFileName;
@@ -42,7 +36,7 @@ private:
        float gapExtend;
        float match;
        float misMatch;
-       GlobalData* globaldata;
+       
 };
 
 #endif