changes for chimera slayer

[mothur.git] / blastdb.hpp

diff --git a/blastdb.hpp b/blastdb.hpp
index c718bb43fb29562b755cdd44e37fa893c7b57f25..9b8965d017b69a8f8cf27884261ea1095f77e176 100644 (file)
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -12,18 +12,19 @@
  */
 
 #include "mothur.h"
-#include "globaldata.hpp"
 
 class BlastDB : public Database {
 
 public:
        BlastDB(float, float, float, float);
+       BlastDB();
        ~BlastDB();
        
        void generateDB();
        void addSequence(Sequence);
        vector<int> findClosestSequences(Sequence*, int);
-
+       vector<int> findClosestMegaBlast(Sequence*, int, int);
+       
 private:
        string dbFileName;
        string queryFileName;
@@ -35,7 +36,7 @@ private:
        float gapExtend;
        float match;
        float misMatch;
-       GlobalData* globaldata;
+       
 };
 
 #endif