class BlastDB : public Database {
public:
- BlastDB(float, float, float, float);
- BlastDB();
+ BlastDB(string, float, float, float, float, string);
+ BlastDB(string);
~BlastDB();
void generateDB();
void addSequence(Sequence);
vector<int> findClosestSequences(Sequence*, int);
- vector<int> findClosestMegaBlast(Sequence*, int);
+ vector<int> findClosestMegaBlast(Sequence*, int, int);
private:
string dbFileName;
float gapExtend;
float match;
float misMatch;
+
};
#endif