*/
#include "mothur.h"
-#include "globaldata.hpp"
class BlastDB : public Database {
public:
BlastDB(float, float, float, float);
+ BlastDB();
~BlastDB();
void generateDB();
void addSequence(Sequence);
vector<int> findClosestSequences(Sequence*, int);
vector<int> findClosestMegaBlast(Sequence*, int);
-
+
private:
string dbFileName;
string queryFileName;
float gapExtend;
float match;
float misMatch;
- GlobalData* globaldata;
+
};
#endif