changed tags on temp blast db to include template name

[mothur.git] / blastdb.hpp

diff --git a/blastdb.hpp b/blastdb.hpp
index fea55c8256e561af5477356b3c5bc545b30d6960..5daedf53d9a4fc6385d44c90383fca16d14d47c8 100644 (file)
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -12,19 +12,19 @@
  */
 
 #include "mothur.h"
-#include "globaldata.hpp"
 
 class BlastDB : public Database {
 
 public:
-       BlastDB(float, float, float, float);
+       BlastDB(string, float, float, float, float);
+       BlastDB();
        ~BlastDB();
        
        void generateDB();
        void addSequence(Sequence);
        vector<int> findClosestSequences(Sequence*, int);
-       map<int, float> findClosest(Sequence*, int); //template index -> searchscore
-
+       vector<int> findClosestMegaBlast(Sequence*, int, int);
+       
 private:
        string dbFileName;
        string queryFileName;
@@ -36,7 +36,7 @@ private:
        float gapExtend;
        float match;
        float misMatch;
-       GlobalData* globaldata;
+       
 };
 
 #endif