working on citations

[mothur.git] / blastdb.hpp

diff --git a/blastdb.hpp b/blastdb.hpp
index 9398ba0362b9f501bc6684b508c6befcfe20b4d5..5daedf53d9a4fc6385d44c90383fca16d14d47c8 100644 (file)
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -16,14 +16,14 @@
 class BlastDB : public Database {
 
 public:
-       BlastDB(float, float, float, float);
+       BlastDB(string, float, float, float, float);
        BlastDB();
        ~BlastDB();
        
        void generateDB();
        void addSequence(Sequence);
        vector<int> findClosestSequences(Sequence*, int);
-       vector<int> findClosestMegaBlast(Sequence*, int);
+       vector<int> findClosestMegaBlast(Sequence*, int, int);
        
 private:
        string dbFileName;
@@ -36,6 +36,7 @@ private:
        float gapExtend;
        float match;
        float misMatch;
+       
 };
 
 #endif