chimera.slayer

[mothur.git] / blastdb.cpp

diff --git a/blastdb.cpp b/blastdb.cpp
index cc85989dad80dd1b0f85997b3428006b7d353c5c..aadff822bc9efb930f3a8f4c969fc3e5bc08e3fb 100644 (file)
--- a/blastdb.cpp
+++ b/blastdb.cpp
@@ -141,13 +141,13 @@ vector<int> BlastDB::findClosestMegaBlast(Sequence* seq, int n, int minPerID) {
                
                while(!m8FileHandle.eof()){
                        m8FileHandle >> dummy >> templateAccession >> searchScore >> numBases >> mismatch >> gap >> startQuery >> endQuery >> startRef >> endRef >> eScore >> score;
-                       //cout << dummy << '\t' << templateAccession << '\t' << searchScore << '\t';
+                       //cout << dummy << '\t' << templateAccession << '\t' << searchScore << '\t' << numBases << '\t' << mismatch << '\t' << gap << '\t' << startQuery << '\t' << endQuery << '\t' << startRef << '\t' << endRef << '\t' << eScore << '\t' << score << endl; 
                        
                        //get rest of junk in line
                        //while (!m8FileHandle.eof())   {       char c = m8FileHandle.get(); if (c == 10 || c == 13){   break;  }else{ cout << c; }     } //
                                //cout << endl;
                        m->gobble(m8FileHandle);
-                       if (searchScore >= minPerID) {
+                       if (searchScore >= minPerID) { 
                                topMatches.push_back(templateAccession);
                                Scores.push_back(searchScore);
                        }