added otu.association command. added calcSpearman, calcKendall and calcPearson functi...

[mothur.git] / blastalign.hpp

diff --git a/blastalign.hpp b/blastalign.hpp
index 696c134375785698c1c15649fef4adc2df783a4a..5b78da6b635770b53453cf9b6ec84493b17bf71a 100644 (file)
--- a/blastalign.hpp
+++ b/blastalign.hpp
@@ -12,7 +12,7 @@
  */
  
 #include "mothur.h"
-#include "globaldata.hpp"
+
 
 class BlastAlignment : public Alignment {
 
@@ -20,6 +20,8 @@ public:
        BlastAlignment(float, float, float, float);
        ~BlastAlignment();
        void align(string, string);
+       void setMatrix(int){};
+       
 private:
 
        string candidateFileName;
@@ -32,6 +34,5 @@ private:
        float mismatch;
        float gapOpen;
        float gapExtend;
-       GlobalData* globaldata;
 };